homologizer
Homologizer: phasing gene copies into polyploid subgenomes
Possibly Available
Evidence-backed skills
Repositories
sumac
SUMAC: Python package to data-mine GenBank and construct phylogenetic supermatrices
RevBayes_UC_Berkeley_2018_Workshop
UC Berkeley 2018 RevBayes Workshop: Phylogenetic graphical models and Bayesian inference
ChromoSSE
ChromoSSE: phylogenetic models of chromosome evolution
universalFQA
Universal FQA Calculator: https://universalfqa.org/
species_selection_tree_shape
Scripts for the paper "Species selection regime and phylogenetic tree shape"
onagraceae
Stochastic character mapping of state-dependent diversification
IB290
UC Berkeley Grad Seminar in Phylogenetics
anc_state_validation
Validating ancestral state estimates for SSE models in RevBayes